Information for 2-CHTRGSAAAGVCTGMR (Motif 4)

A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
Reverse Opposite:
A G T C A C G T A G T C C G T A C T A G A T C G G T A C C A G T C G A T A G C T A T G C T A G C A G T C C G T A C G T A A C T G
p-value:1e-6
log p-value:-1.509e+01
Information Content per bp:1.620
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif13.33%
Number of Background Sequences with motif277.2
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets35.7 +/- 23.8bp
Average Position of motif in Background51.1 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CHTRGSAAAGVCTGMR
TACCATAGCAACGGT----
 A C G T A C G T A C G T A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CHTRGSAAAGVCTGMR
CSTGGGAAAD------
 A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CHTRGSAAAGVCTGMR
CCGCATAGCAACGGA----
 A C G T A C G T A C G T A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CHTRGSAAAGVCTGMR
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CHTRGSAAAGVCTGMR
SCCTAGCAACAG-----
 A C G T A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CHTRGSAAAGVCTGMR
GTTGCCATGGCAAC-------
 A C G T A C G T A C G T A C G T A C G T A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CHTRGSAAAGVCTGMR
CTTGGCAA--------
 A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CHTRGSAAAGVCTGMR
NATGGAAAAN------
 A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:9
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----CHTRGSAAAGVCTGMR
ATTTGCATAACAAAG------
 A C G T A C G T A C G T A C G T A C G T A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CHTRGSAAAGVCTGMR
AACCTTATAT---------
 A C G T A C G T A C G T A G T C G A C T A C G T C T A G A C T G A T C G C T G A C G T A G C T A C A T G T A C G G A T C C G A T T C A G G T C A T C A G
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T