Information for 5-GGCAAGCTTG (Motif 11)

C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G
Reverse Opposite:
A T G C C G T A C T G A A C T G A G T C A C G T A C G T A C T G A G T C G A T C
p-value:1e-6
log p-value:-1.557e+01
Information Content per bp:1.879
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif5.75%
Number of Background Sequences with motif67.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets34.8 +/- 17.3bp
Average Position of motif in Background47.6 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.84
Offset:2
Orientation:forward strand
Alignment:GGCAAGCTTG
--CAAGCTT-
 C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G
A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGCTTG
AAGGCAAGTGT-
 A C G T A C G T C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGCAAGCTTG-----
GTCATGCHTGRCTGS
 C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGCAAGCTTG-----
NGTCACGCTTGGCTGC
 A C G T C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGCAAGCTTG
GCNGCCATCTTG
 A C G T A C G T C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGCTTG
TTGCCAAG----
 A C G T A C G T C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCAAGCTTG------
CGTCACGCATGACTGCA
 A C G T C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGCAAGCTTG
GCCGCCATCTTG
 A C G T A C G T C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GGCAAGCTTG
---CAGCC--
 C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GGCAAGCTTG------
CGTCACGCATGACTGCA
 A C G T C T A G A C T G A G T C C G T A C G T A A C T G G T A C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A