Information for 1-AAGGCTTGAGGAG (Motif 1)

C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G
Reverse Opposite:
G T A C A C G T A G T C G T A C A C G T A G T C C G T A C G T A A C T G A G T C A G T C A C G T A C G T
p-value:1e-11
log p-value:-2.576e+01
Information Content per bp:1.892
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.60%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.2 +/- 32.6bp
Average Position of motif in Background60.2 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAGGCTTGAGGAG
TTTGATTGATGN-
 C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AAGGCTTGAGGAG
-AAGCTTG-----
 C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G
A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AAGGCTTGAGGAG
-AGGTGTGA----
 C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G
A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AAGGCTTGAGGAG-
TGAAGGGATTAATCATC
 A C G T A C G T A C G T C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

TBX21/MA0690.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAGGCTTGAGGAG
AAGGTGTGAA---
 C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G
C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAGGCTTGAGGAG
-AGGTGTGA----
 C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G
A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAGGCTTGAGGAG
AAGGTGTGAAAAT
 C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AAGGCTTGAGGAG
-ATGATKGATGRC
 C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAGGCTTGAGGAG
TAGGTGTGAAG--
 C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T A C G T

MGA/MA0801.1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AAGGCTTGAGGAG
-AGGTGTGA----
 C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C T G C G T A A C T G C T A G C G T A A C T G
A C G T C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T A C G T A C G T