Information for 1-ATTTGGAAMC (Motif 2)

C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C
Reverse Opposite:
A T C G A C T G A G C T A C G T A G T C G T A C C G T A C G T A C G T A A C G T
p-value:1e-9
log p-value:-2.212e+01
Information Content per bp:1.877
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif148.9
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets42.7 +/- 27.7bp
Average Position of motif in Background49.2 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:ATTTGGAAMC-
-TTTGAAACCG
 C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ATTTGGAAMC
NNTTGGCANN
 C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFATC1/MA0624.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATTTGGAAMC-
-NNTGGAAANN
 C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C A C G T
A C G T C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ATTTGGAAMC
--TTGGCA--
 C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGGAAMC--
TNTAATTTGCATACNA
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGGAAMC--
TNTAATTTGCATACNA
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----ATTTGGAAMC--
TNTAATTTGCATANNN
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:ATTTGGAAMC
---TGGAAAA
 C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C
A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATTTGGAAMC
ATTTGCATAT
 C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C
G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ATTTGGAAMC
CTCATTTGCATW-
 A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C T G A C T G C G T A C T G A G T A C A T G C
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T