Information for 9-ATATTTCAAA (Motif 9)

C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A
Reverse Opposite:
C G A T A C G T C G A T A T C G C G T A G T C A C G T A A C G T G T C A G A C T
p-value:1e-10
log p-value:-2.369e+01
Information Content per bp:1.682
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.49%
Number of Background Sequences with motif896.0
Percentage of Background Sequences with motif1.89%
Average Position of motif in Targets49.8 +/- 29.3bp
Average Position of motif in Background50.2 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:ATATTTCAAA---
---TTTGAAACCG
 C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ATATTTCAAA-
CTAATATTGCTAAA
 A C G T A C G T A C G T C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---ATATTTCAAA-
CTAATATTGCTAAA
 A C G T A C G T A C G T C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:ATATTTCAAA-
--NATTCAAAT
 C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A A C G T
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ATATTTCAAA--
--ACATCAAAGG
 C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A A C G T A C G T
A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

PB0187.1_Tcf7_2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATATTTCAAA---
CCGTATTATAAACAA
 A C G T A C G T C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A A C G T A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

PB0148.1_Mtf1_2/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATATTTCAAA---
NNTTTTTCTTATNT
 A C G T C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A A C G T A C G T A C G T
A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATATTTCAAA
ATGCATAATTCA--
 A C G T A C G T A C G T A C G T C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ATATTTCAAA------
TATAGATCAAAGGAAAA
 A C G T C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:ATATTTCAAA--
--ACWTCAAAGG
 C T G A C A G T T G C A G C A T A C G T G C A T T A G C G C T A T G C A G C T A A C G T A C G T
A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G