Information for 9-CATRGATSTMCTT (Motif 8)

A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T
Reverse Opposite:
C G T A C G T A A C T G A C G T C G T A T A C G C G T A A C G T T A G C A G T C C G T A A C G T A C T G
p-value:1e-10
log p-value:-2.378e+01
Information Content per bp:1.886
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.7 +/- 20.5bp
Average Position of motif in Background51.2 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CATRGATSTMCTT
--AAGATATCCTT
 A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T
A C G T A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CATRGATSTMCTT--
YATGCATATRCATRT
 A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CATRGATSTMCTT
-ATTGATTYND--
 A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T
A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CATRGATSTMCTT
NTATYGATCH----
 A C G T A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CATRGATSTMCTT
CTCATGAATATTCAT
 A C G T A C G T A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CATRGATSTMCTT
NNTNTCATGAATGT----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CATRGATSTMCTT
-ATGMATATDC--
 A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CATRGATSTMCTT
TNCCTTTGATGT----
 A C G T A C G T A C G T A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T
C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CATRGATSTMCTT----
NATTTAAGTACTTANNA
 A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

CUX1/MA0754.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CATRGATSTMCTT
NTATCGATTA----
 A C G T A G T C C G T A A C G T C T A G A C T G C G T A A C G T A T C G A C G T G T C A G T A C A C G T A C G T
C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T A C G T A C G T