Information for 5-AACTGCAGGT (Motif 3)

G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T
Reverse Opposite:
C G T A A T G C G T A C A C G T T C A G G A T C C T G A T C A G C G A T C A G T
p-value:1e-12
log p-value:-2.971e+01
Information Content per bp:1.706
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif6.15%
Number of Background Sequences with motif921.4
Percentage of Background Sequences with motif1.94%
Average Position of motif in Targets50.2 +/- 26.9bp
Average Position of motif in Background50.3 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AACTGCAGGT----
--SDGCAGGTGCNS
 G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

SNAI2/MA0745.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AACTGCAGGT--
---AACAGGTGT
 G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:3
Score:0.66
Offset:4
Orientation:forward strand
Alignment:AACTGCAGGT----
----VCAGGTRDRY
 G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AACTGCAGGT---
---NNCAGGTGNN
 G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AACTGCAGGT--
CACAGCAGGGGG
 G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AACTGCAGGT
DCTCAGCAGG-
 A C G T G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

TCF3/MA0522.2/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AACTGCAGGT---
---NNCAGGTGTN
 G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AACTGCAGGT----
DCHCAGCAGGRGGCC
 A C G T G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

TCF4/MA0830.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AACTGCAGGT---
---NNCAGGTGCG
 G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AACTGCAGGT--
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A C G T G T C A G C T A A G T C A G C T C T A G A G T C C G T A A C T G A T C G G C A T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G