Information for 3-TGCACAGCAGAGCCAA (Motif 12)

A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A C T G A G T C A G C T A G T C A C G T A C T G A G T C A C G T A C T G A C G T C A T G A T G C C G T A
p-value:1e-8
log p-value:-1.902e+01
Information Content per bp:1.887
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.5 +/- 22.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TGCACAGCAGAGCCAA
--CACAGCAGGGGG--
 A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TGCACAGCAGAGCCAA
--CACAGN--------
 A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.56
Offset:8
Orientation:forward strand
Alignment:TGCACAGCAGAGCCAA-
--------CGTGCCAAG
 A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGCAGAGCCAA
GAGCACAGCAGGACA--
 A C G T A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.56
Offset:10
Orientation:reverse strand
Alignment:TGCACAGCAGAGCCAA
----------TGCCAA
 A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGCACAGCAGAGCCAA
-DCTCAGCAGG-----
 A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGCACAGCAGAGCCAA
CCACACAGCAGGAGA--
 A C G T A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TGCACAGCAGAGCCAA
--AACAGCTG------
 A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A
A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TGCACAGCAGAGCCAA
---ACATCAAAGGNA-
 A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A
A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TGCACAGCAGAGCCAA
TCNNTTTACAGCGNNNT---
 A C G T A C G T A C G T A C G T A C G T A T C G G A T C C G T A A G T C C G T A A C T G A G T C C G T A C T A G C T G A A C T G A G T C A G T C C G T A C T G A
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T A C G T A C G T A C G T