Information for 22-CACTGTCCTCTATTCA (Motif 46)

A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A C G T A A C G T C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A A C T G A C G T A C T G
p-value:1e-3
log p-value:-8.096e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CACTGTCCTCTATTCA
---TGACCTYA-----
 A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CACTGTCCTCTATTCA--
-NTCNTCCCCTATNNGNN
 A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T
A C G T T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CACTGTCCTCTATTCA
---TGACCTTGAT---
 A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CACTGTCCTCTATTCA
AGGTCANTGACCTN------
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CACTGTCCTCTATTCA
---TGACCYCT-----
 A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A
A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CACTGTCCTCTATTCA--
---TGWCCTCARNTGACC
 A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CACTGTCCTCTATTCA
--CTGACCTTTG----
 A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CACTGTCCTCTATTCA---
---TGACCTNTAGTAACCC
 A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CACTGTCCTCTATTCA
CCATTGTTTT-------
 A C G T A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---CACTGTCCTCTATTCA------
CCTCATGGTGYCYTWYTCCCTTGTG
 A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C T G A C G T A G T C A G T C A C G T A G T C A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G A T C A G C T T G A C G C T A A G C T C A T G A C T G A C G T T C A G A G T C G A T C G A C T A G C T G C T A A G T C A G C T A G T C G A T C A T G C A G C T G A C T C A T G A C G T A T C G