Information for 21-TTCTTAATTACATAGA (Motif 45)

A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T C G T A A C G T A C T G A C G T C G T A C G T A A C G T A C G T C G T A C G T A A C T G C G T A C G T A
p-value:1e-3
log p-value:-8.096e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0071.1_Hoxc6/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTCTTAATTACATAGA
NNTNATTAATTAATTTG-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
G C A T A C G T A G C T G C A T T G C A C A G T G A C T G C T A C G T A C G A T C G A T C T G A G T C A A G C T C G A T G A C T T C A G A C G T

PH0069.1_Hoxc4/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTCTTAATTACATAGA
NNTNNTTAATTAATNCG-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
C A G T C G T A A C G T C G A T T C A G G C A T G A C T G T C A C G T A C G A T A C G T C T G A C G T A G A C T C A G T A G T C A C T G A C G T

PH0100.1_Lmx1a/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTCTTAATTACATAGA
NNTTTTTAATTAATTCG-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
C T A G C T A G C G A T C G A T G C A T G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G A T C G A T A T G C A T C G A C G T

PH0070.1_Hoxc5/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTCTTAATTACATAGA
NNTNATTAATTAATTCG-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
C G T A C T A G A C G T C G T A C T G A A G C T G A C T G T C A C G T A G C A T C A G T C T G A T C G A A G C T C A G T A T G C A T C G A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TTCTTAATTACATAGA
---TTAATTAN-----
 A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T A C G T A C G T A C G T A C G T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TTCTTAATTACATAGA
---YTAATTAVHT---
 A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
A C G T A C G T A C G T A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T A C G T A C G T A C G T

PH0059.1_Hoxb4/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTCTTAATTACATAGA
GNTNATTAATTAACNNG-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
C T A G C A T G A C G T C G T A T C G A G A C T G A C T G T C A C G T A C G A T A C G T C T G A C T G A A G T C C A T G A G T C A T C G A C G T

PH0051.1_Hoxa4/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTCTTAATTACATAGA
GATTATTAATTAACTTG-
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
C T A G C T G A G A C T G A C T T C G A G C A T G A C T G T C A C G T A G A C T A C G T C T G A C G T A A G T C C A G T A G C T A C T G A C G T

PH0061.1_Hoxb6/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTCTTAATTACATAGA
TATTGGTAATTACCTT--
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T A C G T A C G T

MEOX2/MA0706.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTCTTAATTACATAGA
--NTTAATTACN----
 A C G T A C G T A G T C A C G T A C G T C G T A C G T A A C G T A C G T C G T A A G T C C G T A A C G T C G T A A C T G C G T A
A C G T A C G T A C T G G C A T G A C T T C G A G T C A C A G T A C G T C T G A A T G C G A C T A C G T A C G T A C G T A C G T