Information for 7-GGTAGGTTAG (Motif 33)

A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A G T C A G T C A C G T C G T A A G T C A G T C
p-value:1e-3
log p-value:-8.096e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 0.0bp
Average Position of motif in Background82.0 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGTAGGTTAG---
--CAGGTAAGTAT
 A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

PB0161.1_Rxra_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGTAGGTTAG---
TCGCGAAGGTTGTACT
 A C G T A C G T A C G T A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

POL007.1_BREd/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGTAGGTTAG
-GTTTGTT--
 A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G
A C G T C T A G A C G T C A G T A C G T A C T G A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GGTAGGTTAG
TATAAGTAGGTCAA
 A C G T A C G T A C G T A C G T A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGTAGGTTAG
---AGGTCA-
 A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGTAGGTTAG
AAGAGGATTAG
 A C G T A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GGTAGGTTAG-
--CAGGTGAGG
 A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGTAGGTTAG
AAYTAGGTCA-
 A C G T A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GGTAGGTTAG-
---GGATTAGC
 A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PB0154.1_Osr1_2/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GGTAGGTTAG
NNNTTAGGTAGCNTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T C G T A A C T G A C T G A C G T A C G T C G T A A C T G
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T