Information for 3-TTGACTTTTCTAYCAW (Motif 3)

A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T
Reverse Opposite:
C G T A A C G T A C T G C T G A A G C T C T G A C T A G G T C A C G T A C T G A G T C A A C T G C G A T A G T C G T C A C G T A
p-value:1e-10
log p-value:-2.423e+01
Information Content per bp:1.664
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif21.43%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.7 +/- 28.2bp
Average Position of motif in Background63.6 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTGACTTTTCTAYCAW
TTGACTTTT-------
 A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TTGACTTTTCTAYCAW
NNATTGGACTTTNGNN----
 A C G T A C G T A C G T A C G T A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T A C G T A C G T A C G T

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TTGACTTTTCTAYCAW
TAGAANVTTCTAGAA-
 A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T
G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A A C G T

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TTGACTTTTCTAYCAW
NNTTCTGGAANNTTCTAGAA-
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T
A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TTGACTTTTCTAYCAW
----GYCATCMATCAT
 A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T
A C G T A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

NFAT5/MA0606.1/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TTGACTTTTCTAYCAW
----ATTTTCCATT--
 A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T
A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TTGACTTTTCTAYCAW-
-----CCATCAATCAAA
 A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TTGACTTTTCTAYCAW
-----TTTTCCA----
 A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T A C G T A C G T A C G T

HSF2/MA0770.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TTGACTTTTCTAYCAW
--GAANGTTCTAGAA-
 A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T
A C G T A C G T T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A A C G T

HSF1/MA0486.2/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TTGACTTTTCTAYCAW
--GAACGTTCTAGAA-
 A C G T C A G T C T A G C G T A T A G C A C G T G A C T C G A T A C G T A G T C G A C T C T G A A G C T G T A C G T C A C G A T
A C G T A C G T C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A A C G T