Information for 12-YCAATAMATCMAG (Motif 24)

A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
Reverse Opposite:
T G A C A C G T C A T G A T C G G T C A A C G T A C T G A C G T C T G A C G A T A C G T A C T G T C A G
p-value:1e-5
log p-value:-1.179e+01
Information Content per bp:1.630
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif437.1
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets30.7 +/- 20.2bp
Average Position of motif in Background50.1 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:YCAATAMATCMAG
GCCATAAATCA--
 A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-YCAATAMATCMAG
GGCCATAAATCA--
 A C G T A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-YCAATAMATCMAG
GGCCATAAATCA--
 A C G T A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-YCAATAMATCMAG
GGCCATAAATCAC-
 A C G T A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:YCAATAMATCMAG
GYCATCMATCAT-
 A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:YCAATAMATCMAG
-CCATCAATCAAA
 A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:YCAATAMATCMAG
-TCATCAATCA--
 A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-YCAATAMATCMAG
HNRAATCAAT----
 A C G T A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:YCAATAMATCMAG
CCAATAAAAC---
 A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-YCAATAMATCMAG
RGCCATYAATCA--
 A C G T A G T C G T A C G T C A G C T A A G C T G T C A T G A C C G T A A C G T T A G C G T A C G T C A A C T G
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T