Information for 1-GATTCTGGYTTTKAAC (Motif 1)

A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C
Reverse Opposite:
C T A G A C G T A C G T G T C A C G T A C G T A C T G A C T A G A G T C G A T C C G T A A T C G G T C A G C T A A G C T A T G C
p-value:1e-10
log p-value:-2.426e+01
Information Content per bp:1.695
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif28.57%
Number of Background Sequences with motif19.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets40.0 +/- 26.4bp
Average Position of motif in Background47.1 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0109.1_Bbx_2/Jaspar

Match Rank:1
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GATTCTGGYTTTKAAC-----
----NNNNCTGTTAACNNTNN
 A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

PH0073.1_Hoxc9/Jaspar

Match Rank:2
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GATTCTGGYTTTKAAC---
---GGAGGTCATTAATTAT
 A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.49
Offset:6
Orientation:forward strand
Alignment:GATTCTGGYTTTKAAC
------GGCCATTAAC
 A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

PH0168.1_Hnf1b/Jaspar

Match Rank:4
Score:0.48
Offset:6
Orientation:forward strand
Alignment:GATTCTGGYTTTKAAC-------
------AGCTGTTAACTAGCCGT
 A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

PH0063.1_Hoxb8/Jaspar

Match Rank:5
Score:0.48
Offset:3
Orientation:forward strand
Alignment:GATTCTGGYTTTKAAC---
---ACCGGCAATTAATAAA
 A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:GATTCTGGYTTTKAAC--------
-------GANGTTAACTAGTTTNN
 A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.47
Offset:8
Orientation:forward strand
Alignment:GATTCTGGYTTTKAAC-
--------ATTTGAATT
 A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:GATTCTGGYTTTKAAC-
-------CCTTTGATGT
 A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:GATTCTGGYTTTKAAC--
---GCTGACCTTGAACTN
 A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C A C G T A C G T
A C G T A C G T A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.47
Offset:5
Orientation:reverse strand
Alignment:GATTCTGGYTTTKAAC-
-----TGACCTTGACCT
 A T C G C T G A C A G T A C G T A T G C G C A T C A T G A C T G A G T C A G C T G A C T C G A T A C G T G T C A C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T