Information for 24-TAGACCATTA (Motif 54)

A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C T G A C T G A C G T A G T C A C G T C G T A
p-value:1e-3
log p-value:-7.115e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 0.0bp
Average Position of motif in Background24.6 +/- 0.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:1
Score:0.77
Offset:1
Orientation:forward strand
Alignment:TAGACCATTA-
-AAACMATTAN
 A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A A C G T
A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

BARX1/MA0875.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TAGACCATTA-
---GCAATTAG
 A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:TAGACCATTA--
----YCATTAMC
 A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TAGACCATTA--
--GGCCATTAAC
 A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

BSX/MA0876.1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TAGACCATTA-
---CCAATTAA
 A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TAGACCATTA---
AAAAACCATTAAGG
 A C G T A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A A C G T A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TAGACCATTA-
---BCMATTAG
 A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

Barhl1/MA0877.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TAGACCATTA--
--NNCAATTANN
 A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

HOXB3/MA0903.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TAGACCATTA--
--ACTAATTAGC
 A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

NKX6-2/MA0675.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TAGACCATTA-
---CTAATTAA
 A C G T C G T A A C T G C G T A A G T C A G T C C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A