Information for 17-GCTTGATGAG (Motif 49)

A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C C G T A A C G T A G T C C G T A C G T A A C T G A G T C
p-value:1e-3
log p-value:-7.115e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets84.0 +/- 0.0bp
Average Position of motif in Background57.2 +/- 9.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCTTGATGAG
TTTGATTGATGN-
 A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCTTGATGAG---
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCTTGATGAG
TGATTGATGA-
 A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGATGAG
ATGATKGATGRC
 A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

POU6F2/MA0793.1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCTTGATGAG--
--NTAATGAGCT
 A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G A C G T A C G T
A C G T A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCTTGATGAG-----
GACGATAATGAGCTTGC
 A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTTGATGAG
TGATTTATGGC
 A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCTTGATGAG-
TGATTRATGGCY
 A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PH0016.1_Cux1_1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCTTGATGAG----
ACCGGTTGATCACCTGA
 A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T
C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

PH0152.1_Pou6f1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCTTGATGAG-----
AAACATAATGAGGTTGC
 A C G T A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C