Information for 14-GCAGCGGCAA (Motif 40)

A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A G T C A G T C A C T G A G T C A C G T A C T G A G T C
p-value:1e-3
log p-value:-7.808e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.0 +/- 0.0bp
Average Position of motif in Background53.2 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCAGCGGCAA
CGCAGCTGCG-
 A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCAGCGGCAA--
--GGCGGGAAAH
 A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A A C G T A C G T
A C G T A C G T T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCAGCGGCAA--
--GGCGGGAARN
 A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A A C G T A C G T
A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAGCGGCAA---
CTCAGCAGCTGCTACTG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCAGCGGCAA
NNAGCAGCTGCT-
 A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAGCGGCAA
AGCAGCTGCT-
 A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A
T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCAGCGGCAA
NNACAGCTGC--
 A C G T A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCGGCAA
CAGCAGCTGN--
 A C G T A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCAGCGGCAA
GACAGCTGCAG
 A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A
T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

Myod1/MA0499.1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GCAGCGGCAA
NGNGACAGCTGCN-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G A G T C A C T G A C T G A G T C C G T A C G T A
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A A C G T