Information for 13-CGAACAGTDGACBGAA (Motif 22)

T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
Reverse Opposite:
A G C T A G C T G T A C T C G A A T C G C G A T G T A C G C T A C G T A G A T C G C A T C T A G C G A T G A C T G T A C A T C G
p-value:1e-6
log p-value:-1.550e+01
Information Content per bp:1.641
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.79%
Number of Background Sequences with motif27.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets43.2 +/- 20.4bp
Average Position of motif in Background39.3 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0047.1_Myf6_1/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CGAACAGTDGACBGAA
GAAGAACAGGTGTCCG--
 A C G T A C G T T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGAACAGTDGACBGAA
-GAACAATGGN-----
 T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGAACAGTDGACBGAA
-GAACAATGG------
 T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CGAACAGTDGACBGAA
NNNNNGAACAATTGANN---
 A C G T A C G T A C G T A C G T T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CGAACAGTDGACBGAA
VRAACAATGG------
 T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CGAACAGTDGACBGAA
AGAGRRACAGCWGAC----
 A C G T A C G T A C G T T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CGAACAGTDGACBGAA
AATGAACAATGGAATT--
 A C G T A C G T T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CGAACAGTDGACBGAA
--AACAAAGG------
 T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CGAACAGTDGACBGAA
-RAACAATGGN-----
 T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CGAACAGTDGACBGAA
TAGTGAACAATAGATTT--
 A C G T A C G T A C G T T A G C A C T G C T G A C G T A G A T C C G T A C T A G G C A T C A G T A C T G C G T A A T G C A C G T A C T G C T G A T C G A
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T A C G T A C G T