Information for 10-AKTGGTRWKRRGS (Motif 19)

C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
Reverse Opposite:
T A C G A G T C A G T C A G C T G T C A C G A T A G C T C G T A A G T C A G T C C G T A G T A C A C G T
p-value:1e-6
log p-value:-1.611e+01
Information Content per bp:1.798
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.79%
Number of Background Sequences with motif22.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets56.3 +/- 28.7bp
Average Position of motif in Background45.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AKTGGTRWKRRGS
TTRAGTGSYK------
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AKTGGTRWKRRGS
TTAAGTGGT-------
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AKTGGTRWKRRGS
NTCAAGTGGN-------
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AKTGGTRWKRRGS
TGATTGGCTANN---
 A C G T A C G T C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AKTGGTRWKRRGS
ATTGTTA------
 C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AKTGGTRWKRRGS
TTAAGTGGN-------
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------AKTGGTRWKRRGS
NTNNTTAAGTGGTTANN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AKTGGTRWKRRGS
NNHTGTGGTTWN----
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T A C G T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AKTGGTRWKRRGS
-TAGGTGTGAAG-
 C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
A C G T C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AKTGGTRWKRRGS
CCGATTGGCT------
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A C G T C T G A C G T A A C G T C T G A C T A G A C T G A T C G
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T