Information for 5-AGKAGGARCAGAA (Motif 11)

G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A
Reverse Opposite:
C A G T A C G T A G T C C G A T A C T G A G T C A C G T A T G C T A G C A C G T T G A C A G T C A C G T
p-value:1e-8
log p-value:-1.935e+01
Information Content per bp:1.711
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif26.32%
Number of Background Sequences with motif151.5
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets45.7 +/- 20.1bp
Average Position of motif in Background50.2 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AGKAGGARCAGAA
ADGGYAGYAGCATCT---
 A C G T A C G T A C G T A C G T A C G T G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGKAGGARCAGAA
---TGGAACAGMA
 G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A
A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGKAGGARCAGAA
GGGAGGACNG---
 G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGKAGGARCAGAA
-CCAGGAACAG--
 G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGKAGGARCAGAA---
NNNNAGCAGCTGCTGAN
 A C G T G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------AGKAGGARCAGAA
ATTTACAGTAGCAAAA---
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AGKAGGARCAGAA-
------ANCAGCTG
 G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:AGKAGGARCAGAA
------CACAGN-
 G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

ZNF263/MA0528.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AGKAGGARCAGAA------
GGAGGAGGAGGGGGAGGAGGA
 A C G T A C G T G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T A G C T G A C A T G T A C G G C T A C A T G T C A G T C G A T C A G C T A G C T A G C T A G T C A G C T G A C T A G C T A G C T G A C T A G C T A G C T G A

Ascl2/MA0816.1/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:AGKAGGARCAGAA
---AGCAGCTGCT
 G T C A A C T G A C G T C G T A A C T G A T C G G T C A T C A G A G T C C G T A C T A G G T C A G C T A
A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T