Information for 3-TDAGCTCAACACAAGA (Motif 5)

C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A
Reverse Opposite:
A C G T A T G C A C G T A C G T A T C G C G A T A T C G C G A T A C G T A C T G C T G A A C T G A G T C A C G T G A T C G T C A
p-value:1e-9
log p-value:-2.262e+01
Information Content per bp:1.735
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif16.00%
Number of Background Sequences with motif16.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.2 +/- 23.1bp
Average Position of motif in Background52.6 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0123.1_Foxl1_2/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TDAGCTCAACACAAGA--
--ATATCAAAACAAAACA
 C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A A C G T A C G T
A C G T A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

Mecom/MA0029.1/Jaspar

Match Rank:2
Score:0.50
Offset:7
Orientation:forward strand
Alignment:TDAGCTCAACACAAGA-----
-------AAGATAAGATAACA
 C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

PB0122.1_Foxk1_2/Jaspar

Match Rank:3
Score:0.49
Offset:4
Orientation:forward strand
Alignment:TDAGCTCAACACAAGA---
----CAAACAACAACACCT
 C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

Stat6/MA0520.1/Jaspar

Match Rank:4
Score:0.49
Offset:1
Orientation:forward strand
Alignment:TDAGCTCAACACAAGA
-CATTTCCTGAGAAAT
 C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A
A C G T A T G C C G T A A G C T A C G T C G A T G T A C G A T C C G A T T A C G C T G A C A T G C G T A C T G A T G C A G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.49
Offset:4
Orientation:forward strand
Alignment:TDAGCTCAACACAAGA
----AGCCACTCAAG-
 C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A
A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.48
Offset:4
Orientation:forward strand
Alignment:TDAGCTCAACACAAGA-----
----AACACCAAAACAAAGGA
 C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0120.1_Foxj1_2/Jaspar

Match Rank:7
Score:0.48
Offset:5
Orientation:forward strand
Alignment:TDAGCTCAACACAAGA----
-----ATGTCACAACAACAC
 C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:8
Score:0.47
Offset:2
Orientation:forward strand
Alignment:TDAGCTCAACACAAGA
--ANTTCTNNAGAA--
 C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A
A C G T A C G T C T G A A G C T A C G T A C G T A G T C G A C T G A C T C T G A C T G A C T A G C G T A C G T A A C G T A C G T

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:9
Score:0.47
Offset:4
Orientation:forward strand
Alignment:TDAGCTCAACACAAGA
----TTCCKNAGAA--
 C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A
A C G T A C G T A C G T A C G T G A C T C A G T G A T C G A T C A C G T G A T C C T G A T A C G C G T A G T C A A C G T A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:10
Score:0.47
Offset:2
Orientation:forward strand
Alignment:TDAGCTCAACACAAGA---
--AGGTCAACTAAAGGTCA
 C A G T C A T G C G T A C T A G G T A C A G C T A G T C G T C A C G T A A T G C C G T A A T G C C G T A C G T A A T C G G T C A A C G T A C G T A C G T
A C G T A C G T T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A