Information for 12-AGAAVAGDTVGVC (Motif 28)

C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C
Reverse Opposite:
A C T G A G T C A T G C A G T C C G T A G C T A A G T C A C G T A C G T A C G T A C G T A G T C C G A T
p-value:1e-6
log p-value:-1.456e+01
Information Content per bp:1.727
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif16.00%
Number of Background Sequences with motif121.8
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets58.5 +/- 30.1bp
Average Position of motif in Background52.7 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AGAAVAGDTVGVC
NTTNAGAACAATTA---
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T

PB0047.1_Myf6_1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGAAVAGDTVGVC-
GAAGAACAGGTGTCCG
 A C G T A C G T C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C A C G T
T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGAAVAGDTVGVC
CCAGGAACAG------
 A C G T A C G T A C G T C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AGAAVAGDTVGVC
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAAVAGDTVGVC
AGATAAGA-----
 C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C
C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGAAVAGDTVGVC-
TAGTGAACAATAGATTT
 A C G T A C G T A C G T C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGAAVAGDTVGVC
NVAGATAAGR-----
 A C G T A C G T C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C
T C A G T A G C G C T A C A T G C T G A G C A T C G T A C T G A T A C G T C G A A C G T A C G T A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGAAVAGDTVGVC
TGGAAAA-------
 A C G T C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gata4/MA0482.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGAAVAGDTVGVC
NNGAGATAAGA-----
 A C G T A C G T A C G T C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C
T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T A C G T A C G T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGAAVAGDTVGVC
TTTAGAACAATAAAAT
 A C G T A C G T A C G T C G T A A C T G C G T A C G T A T C G A C G T A C T A G C A G T C G A T T A C G A T C G T A C G A G T C
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T