Information for 1-TTTAGAACTCAAG (Motif 1)

A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C T G G T C A A C T G A C G T A C G T A G T C C G A T C G T A G T C A C T G A
p-value:1e-10
log p-value:-2.462e+01
Information Content per bp:1.843
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif12.00%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.7 +/- 12.7bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTTAGAACTCAAG---
AAGGCGAAATCATCGCA
 A C G T A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TTTAGAACTCAAG
---AAAAGTCAA-
 A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G
A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TTTAGAACTCAAG
TATCATTAGAACGCT--
 A C G T A C G T A C G T A C G T A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TTTAGAACTCAAG
--AGCCACTCAAG
 A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PB0090.1_Zbtb12_1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TTTAGAACTCAAG
NNGATCTAGAACCTNNN
 A C G T A C G T A C G T A C G T A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TTTAGAACTCAAG---
-----AAGGCAAGTGT
 A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PH0112.1_Nkx2-3/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTTAGAACTCAAG-
CNTTAAGTACTTAANG
 A C G T A C G T A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TTTAGAACTCAAG------
----AAGTTCAAGGTCAGC
 A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TTTAGAACTCAAG
---HNRAATCAAT
 A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G
A C G T A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.51
Offset:7
Orientation:forward strand
Alignment:TTTAGAACTCAAG----
-------NTCAAGGTCA
 A G C T A C G T C G A T C G T A A C T G C G T A C G T A G T A C A C G T A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A