Information for 7-CATCTAATTG (Motif 6)

A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C G T A C G T C G T A A C T G C G T A C G A T A C T G
p-value:1e-10
log p-value:-2.492e+01
Information Content per bp:1.856
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets41.3 +/- 27.2bp
Average Position of motif in Background52.2 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CATCTAATTG-
---CTAATKGV
 A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G A C G T
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

Msx3/MA0709.1/Jaspar

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CATCTAATTG-
---NTAATTGN
 A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G A C G T
A C G T A C G T A C G T A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G

MSX1/MA0666.1/Jaspar

Match Rank:3
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CATCTAATTG-
---NTAATTGG
 A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G A C G T
A C G T A C G T A C G T A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G

MSX2/MA0708.1/Jaspar

Match Rank:4
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CATCTAATTG-
---NTAATTGG
 A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G A C G T
A C G T A C G T A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G

Barhl1/MA0877.1/Jaspar

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CATCTAATTG--
--GCTAATTGCT
 A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G A C G T A C G T
A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

BARX1/MA0875.1/Jaspar

Match Rank:6
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CATCTAATTG-
---NTAATTGN
 A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G A C G T
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

LBX2/MA0699.1/Jaspar

Match Rank:7
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CATCTAATTG--
--NNTAATTGGN
 A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G A C G T A C G T
A C G T A C G T A T C G G A T C G C A T T G C A T G C A A C G T A C G T C T A G T C A G A G T C

GBX2/MA0890.1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CATCTAATTG--
--NNTAATTGNN
 A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G A C G T A C G T
A C G T A C G T T A C G A G T C C G A T T G C A T G C A A C G T A G C T C T A G T A C G A G C T

EN1/MA0027.2/Jaspar

Match Rank:9
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CATCTAATTG-
---CTAATTAG
 A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G A C G T
A C G T A C G T A C G T A G T C G C A T T C G A C G T A A C G T A C G T C T G A T A C G

ISX/MA0654.1/Jaspar

Match Rank:10
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CATCTAATTG-
---NTAATTAG
 A G T C C G T A C G A T A G T C A C G T G T C A G T C A G A C T C G A T A C T G A C G T
A C G T A C G T A C G T A G C T C G A T G T C A C G T A C A G T C A G T C T G A T C A G