Information for 1-KCTGARGGAMARMKSG (Motif 2)

A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G
Reverse Opposite:
A G T C A T G C G T A C C A T G A G T C A C G T C A T G A C G T A G T C A G T C A G T C A C G T A G T C C G T A A C T G G T A C
p-value:1e-13
log p-value:-3.111e+01
Information Content per bp:1.811
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.6 +/- 21.9bp
Average Position of motif in Background32.2 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:KCTGARGGAMARMKSG
-NTGATTGACAGN---
 A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:KCTGARGGAMARMKSG
-BTGABTGACAGS---
 A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:KCTGARGGAMARMKSG
--TGAGTGACAGSC--
 A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--KCTGARGGAMARMKSG--
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--KCTGARGGAMARMKSG--
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-KCTGARGGAMARMKSG
TGCTGACTCA-------
 A C G T A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G
G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:KCTGARGGAMARMKSG
---AATGGAAAAT---
 A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G
A C G T A C G T A C G T C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:KCTGARGGAMARMKSG
-----TGGAAAA----
 A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G
A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:KCTGARGGAMARMKSG
---NNTGGAAANN---
 A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G
A C G T A C G T A C G T C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--KCTGARGGAMARMKSG
AAGTTCAAGGTCAGC---
 A C G T A C G T A C T G A G T C A C G T A C T G C G T A C T A G A C T G A C T G C G T A G T A C G T C A T C A G G T A C A C T G A T C G A C T G
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T