Information for 5-GGCGCCTCTGCCC (Motif 5)

A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C
Reverse Opposite:
C T A G T A C G C T A G A T G C T C G A A C T G G T C A A T C G A C T G T G A C A C T G T G A C A T G C
p-value:1e-12
log p-value:-2.768e+01
Information Content per bp:1.756
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif2.82%
Number of Background Sequences with motif231.8
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets49.0 +/- 23.7bp
Average Position of motif in Background48.6 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NRF1/MA0506.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGCGCCTCTGCCC
-GCGCCTGCGCA-
 A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C
A C G T T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGCGCCTCTGCCC--
-TGACCTTTGCCCTA
 A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C A C G T A C G T
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGCGCCTCTGCCC---
----GCTCCGCCCMCY
 A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

PB0113.1_E2F3_2/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCTCTGCCC
AGCTCGGCGCCAAAAGC-
 A C G T A C G T A C G T A C G T A C G T A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C A C G T

POL003.1_GC-box/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGCGCCTCTGCCC---
--NAGCCCCGCCCCCN
 A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C A C G T A C G T A C G T
A C G T A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GGCGCCTCTGCCC----------
---GCCTCCTCCMTCWGACTGKS
 A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGCGCCTCTGCCC---
-TGACCTTTGCCCTAN
 A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C A C G T A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

SP1/MA0079.3/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGCGCCTCTGCCC
-GCCCCGCCCCC-
 A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C
A C G T A C T G A G T C G A T C A G T C A G T C C A T G A G T C A G T C A G T C G A T C A G T C A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GGCGCCTCTGCCC---
-------CTGCCCGCA
 A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

KLF5/MA0599.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGCGCCTCTGCCC
---GCCCCGCCCC
 A T C G A C T G G T A C A C T G A G T C A T G C A C G T T G A C A G C T A T C G A G T C A G T C G A T C
A C G T A C G T A C G T A C T G A G T C A G T C G T A C A G T C C T A G A G T C A G T C A G T C G A T C