Information for 10-TGGCAGTCAT (Motif 21)

C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T
Reverse Opposite:
G T C A A C G T T C A G G C T A A G T C C G A T A T C G A T G C A G T C C G T A
p-value:1e-7
log p-value:-1.778e+01
Information Content per bp:1.840
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif96.3
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets50.6 +/- 23.0bp
Average Position of motif in Background47.9 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TGGCAGTCAT
SCTGTCAVTCAV
 A C G T A C G T C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PB0195.1_Zbtb3_2/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TGGCAGTCAT--
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGGCAGTCAT
NCTGTCAATCAN
 A C G T A C G T C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:4
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:TGGCAGTCAT-
-----GTCATN
 C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGTCAT
AGGTGHCAGACA-
 A C G T A C G T A C G T C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGTCAT
CTTGGCAA----
 A C G T A C G T C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGGCAGTCAT
TGGCAGTTGN
 C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGTCAT
AGGTGNCAGACAG
 A C G T A C G T A C G T C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGTCAT
TTGGCA-----
 A C G T C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGTCAT
GSCTGTCACTCA-
 A C G T A C G T A C G T C G A T A C T G A T C G A T G C G C T A A C T G C G A T A G T C G T C A A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T