Information for 13-GCGGCAGGGTCGG (Motif 18)

A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C T C A G C G T A A G T C A G T C A G T C A C G T A C T G A G T C A G T C A C T G A G T C
p-value:1e-8
log p-value:-1.935e+01
Information Content per bp:1.897
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.8 +/- 24.5bp
Average Position of motif in Background62.9 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0110.1_Bcl6b_2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCGGCAGGGTCGG----
-NNTNAGGGGCGGNNNN
 A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCGGCAGGGTCGG
CACAGCAGGGGG--
 A C G T A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCGGCAGGGTCGG---
--GGCGGGGGCGGGGG
 A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCGGCAGGGTCGG
DCHCAGCAGGRGGCC
 A C G T A C G T A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0202.1_Zfp410_2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCGGCAGGGTCGG-----
-NNTNNGGGGCGGNGNGN
 A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C T G A C A G T C G A T G C A T T A C G A C T G T A C G A C T G T G A C T C A G C T A G C T A G C T A G C A G T C T A G T C G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCGGCAGGGTCGG
DCTCAGCAGG-----
 A C G T A C G T A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0107.1_Ascl2_2/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GCGGCAGGGTCGG-----
--NATNGGGNGGGGANAN
 A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T G C A G A C T T C G A C T A G C T A G T C A G G A T C A C T G C A T G A T C G C A T G G C T A A C G T C T G A T A C G

PB0010.1_Egr1_1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCGGCAGGGTCGG-
ANTGCGGGGGCGGN
 A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G A C G T
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

SP2/MA0516.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCGGCAGGGTCGG---
-GGGNGGGGGCGGGGC
 A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G A C G T A C G T A C G T
A C G T T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

POL003.1_GC-box/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCGGCAGGGTCGG
AGGGGGCGGGGCTG-
 A C G T A C G T A C T G A G T C T A C G A C T G A G T C G T C A A C T G A C T G A C T G C G A T A G T C A C T G A C T G
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T