Information for 3-GCGCCCAGTCTGGCTG (Motif 14)

A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G
Reverse Opposite:
A G T C C T G A A C T G A G T C A G T C C G T A A C T G C G T A A T G C A G C T A C T G C T A G A C T G A G T C A C T G A G T C
p-value:1e-9
log p-value:-2.087e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.6 +/- 12.8bp
Average Position of motif in Background71.8 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GCGCCCAGTCTGGCTG
-----CTGTCTGG---
 A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GCGCCCAGTCTGGCTG
------GGTCTGGCAT
 A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCGCCCAGTCTGGCTG
---VBSYGTCTGG---
 A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCGCCCAGTCTGGCTG-
--GTCATGCHTGRCTGS
 A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G A C G T
A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

GLI2/MA0734.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCGCCCAGTCTGGCTG
GCGACCACACTG----
 A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCGCCCAGTCTGGCTG
-TGCCCAGNHW-----
 A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCGCCCAGTCTGGCTG--
-NNTNNTGTCTGGNNTNG
 A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G A C G T A C G T
A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GCGCCCAGTCTGGCTG
-----TWGTCTGV---
 A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GCGCCCAGTCTGGCTG--
-----CTGTCTGTCACCT
 A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:GCGCCCAGTCTGGCTG--
------TGTCTGDCACCT
 A C T G A G T C A C T G A G T C A G T C A G T C C T G A A T C G A C G T A G T C A C G T A C T G A C T G A G T C A G C T C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T