Information for 6-GWYTGGCACYSCTKCA (Motif 12)

A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A
Reverse Opposite:
C G A T A C T G T G A C C G T A A C T G A T C G C T A G A C T G A C G T A C T G A G T C A G T C C G T A C T A G G C T A A G T C
p-value:1e-10
log p-value:-2.434e+01
Information Content per bp:1.857
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets20.3 +/- 11.3bp
Average Position of motif in Background15.6 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GWYTGGCACYSCTKCA
TGTCTGDCACCT-----
 A C G T A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GWYTGGCACYSCTKCA
-NTTGGCANN------
 A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GWYTGGCACYSCTKCA
CTGTCTGTCACCT-----
 A C G T A C G T A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GWYTGGCACYSCTKCA
GGTTGGCAT-------
 A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GWYTGGCACYSCTKCA
--TTGGCA--------
 A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GWYTGGCACYSCTKCA
NNTTGGCANN------
 A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GWYTGGCACYSCTKCA
NGTAGGTTGGCATNNN----
 A C G T A C G T A C G T A C G T A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GWYTGGCACYSCTKCA-
---TGGCACCATGCCAA
 A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GWYTGGCACYSCTKCA
-CTTGGCAA-------
 A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GWYTGGCACYSCTKCA
GGTCTGGCAT-------
 A C G T A C T G C G A T A G T C A C G T A C T G A C T G G T A C G T C A A G T C A G T C T A C G A G T C A C G T A C T G A G T C C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T