Information for 1-AAATACCCTT (Motif 5)

C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T
Reverse Opposite:
C G T A C T G A C T A G T A C G C A T G A C G T C G T A A G C T A C G T C G A T
p-value:1e-8
log p-value:-1.932e+01
Information Content per bp:1.757
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif621.8
Percentage of Background Sequences with motif1.27%
Average Position of motif in Targets45.6 +/- 27.4bp
Average Position of motif in Background52.3 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AAATACCCTT
AAGATATCCTT
 A C G T C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAATACCCTT
GGAAATTCCC--
 A C G T A C G T C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----AAATACCCTT--
NTAGTTAATCCCCTTAN
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T A C G T A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AAATACCCTT
GGGAAATCCCCN-
 A C G T A C G T A C G T C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AAATACCCTT
GGAAATCCCC--
 A C G T A C G T C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAATACCCTT
GGAAATTCCC--
 A C G T A C G T C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAATACCCTT
CTAATCCTCTT
 A C G T C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

Esrrg/MA0643.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAATACCCTT--
--ATGACCTTGA
 C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T A C G T A C G T
A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AAATACCCTT
DCYAAAAATAGM---
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T

PH0122.1_Obox2/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AAATACCCTT--
ATAGTTAATCCCCCTCA
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T G A A C G T T G C A G T A C A T G C A G T C G A C T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A