Information for 1-ARAATACYTKYTTKKW (Motif 2)

G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
Reverse Opposite:
C G A T T G A C G T A C C G T A C T G A C T A G G T A C C G T A C T A G A T C G A C G T C G T A A C G T C G A T A G C T A C G T
p-value:1e-12
log p-value:-2.914e+01
Information Content per bp:1.797
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif5.21%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.8 +/- 26.2bp
Average Position of motif in Background45.5 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---ARAATACYTKYTTKKW
TTCNAAGTACTTNNNNN--
 A C G T A C G T A C G T G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---ARAATACYTKYTTKKW
CCAAAAATAG---------
 A C G T A C G T A C G T G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------ARAATACYTKYTTKKW
ATGCTAAAAATAGAA-------
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ARAATACYTKYTTKKW
-RYHYACCTGB-----
 G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
A C G T T C A G A G C T G C T A A G T C C G T A G T A C A T G C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----ARAATACYTKYTTKKW
DCYAAAAATAGM--------
 A C G T A C G T A C G T A C G T G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:ARAATACYTKYTTKKW
---NNACTTGCCTT--
 G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

GRHL1/MA0647.1/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ARAATACYTKYTTKKW
--NAAACCGGTTTT--
 G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
A C G T A C G T G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:ARAATACYTKYTTKKW
---NCACCTGTN----
 G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
A C G T A C G T A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:9
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----ARAATACYTKYTTKKW
GCTAAAAATAGC--------
 A C G T A C G T A C G T A C G T G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ARAATACYTKYTTKKW
NNNTTAATTGGTTTTT
 G T C A C T G A C G T A C G T A A C G T C G T A A T G C A G T C C G A T A C T G A G T C A G C T A C G T A C T G A C G T C G T A
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T