Information for 6-AGMCAGCCAG (Motif 14)

C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G A T G C A C G T
p-value:1e-3
log p-value:-7.326e+00
Information Content per bp:1.805
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif5.21%
Number of Background Sequences with motif349.5
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets42.2 +/- 33.0bp
Average Position of motif in Background51.9 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGMCAGCCAG
--CCAGACAG
 C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGMCAGCCAG
--BCAGACWA
 C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGMCAGCCAG----
CAAATCCAGACATCACA
 A C G T A C G T A C G T C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGMCAGCCAG
TGGCAGNCTGCCAG
 A C G T A C G T A C G T A C G T C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGMCAGCCAG
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGMCAGCCAG
ACTAGCCAATCA-
 A C G T A C G T A C G T C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGMCAGCCAG---
SCAGYCADGCATGAC
 A C G T A C G T C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGMCAGCCAG--
--CCAGACRSVB
 C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGMCAGCCAG
-CACAGN---
 C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGMCAGCCAG
AGGTGNCAGACAG
 A C G T A C G T A C G T C G T A A T C G T G A C A G T C C G T A C T A G T G A C G T A C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G