Information for 5-GCTAGGAGGTCCGCGG (Motif 11)

A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G
Reverse Opposite:
A G T C A G T C C A T G A T G C A C T G A C T G C G T A A G T C A G T C A C G T A G T C G T A C A C G T G T C A C T A G A G T C
p-value:1e-5
log p-value:-1.317e+01
Information Content per bp:1.916
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.3 +/- 21.5bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GCTAGGAGGTCCGCGG
----CAACGTCCGCGG
 A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G
A C G T A C G T A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTAGGAGGTCCGCGG
CGTGGGTGGTCC----
 A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCTAGGAGGTCCGCGG
CTACTAGGATGTNNTN--
 A C G T A C G T A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GCTAGGAGGTCCGCGG
---CAAAGGTCAAGGG
 A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G
A C G T A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

NR2C2/MA0504.1/Jaspar

Match Rank:5
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GCTAGGAGGTCCGCGG---
----AGGGGTCAGAGGTCA
 A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GCTAGGAGGTCCGCGG
----AGRGGTCA----
 A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

ZBTB7A/MA0750.1/Jaspar

Match Rank:7
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GCTAGGAGGTCCGCGG
--TCGGTGGTCGCN--
 A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G
A C G T A C G T A C G T G T A C C A T G A C T G C A G T T A C G C T A G C A G T A G T C A T C G A G T C T G A C A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:forward strand
Alignment:GCTAGGAGGTCCGCGG
------AGGTCA----
 A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

ZBTB7B/MA0694.1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GCTAGGAGGTCCGCGG
-TTCGGTGGTCGC---
 A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G
A C G T C A G T C G A T A G T C C T A G C A T G C A G T A T C G A C T G C A G T G A T C A T C G G A T C A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GCTAGGAGGTCCGCGG---
-----GAGGTCAAAGGTCA
 A C T G A G T C A C G T G T C A A C T G A C T G C G T A A C T G A C T G A C G T A G T C A G T C A T C G G A T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A