Information for 5-CTTGTTGGGT (Motif 9)

A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A G T C C G T A T C G A A G T C G T C A C G T A A C T G
p-value:1e-5
log p-value:-1.340e+01
Information Content per bp:1.912
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.04%
Number of Background Sequences with motif40.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets59.3 +/- 22.7bp
Average Position of motif in Background47.7 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTTGTTGGGT--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0167.1_Sox13_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTTGTTGGGT----
GTATTGGGTGGGTAATT
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CTTGTTGGGT--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTTGTTGGGT
CCCCCTGCTGTG-
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTTGTTGGGT--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CTTGTTGGGT--
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CTTGTTGGGT
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTTGTTGGGT
CCTGCTGAGH
 A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

GLIS1/MA0735.1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTTGTTGGGT--
GCTTCGTGGGGGGTCT
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T
T A C G G T A C C G A T G C A T G T A C A C T G G A C T A C T G C T A G A T C G A T C G C A T G A T C G G C A T T G A C C A G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTTGTTGGGT---
RGSMTBCTGGGAAAT
 A C G T A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C T G A C T G A C T G A C G T A C G T A C G T A C G T
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T