Information for 5-TCCACGGTGTTAA (Motif 10)

A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A A G T C C G T A A G T C A G T C A C T G A G C T A C T G A C T G C G T A
p-value:1e-5
log p-value:-1.313e+01
Information Content per bp:1.946
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 24.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TCCACGGTGTTAA
---AAGGTGTKAA
 A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A
A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:TCCACGGTGTTAA-
----AGGTGTTAAT
 A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

TBX2/MA0688.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TCCACGGTGTTAA-
---AAGGTGTGAAA
 A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

PB0013.1_Eomes_1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCCACGGTGTTAA----
GAAAAGGTGTGAAAATT
 A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

TBX21/MA0690.1/Jaspar

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TCCACGGTGTTAA
---AAGGTGTGAA
 A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A
A C G T A C G T A C G T C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A

TBX20/MA0689.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCCACGGTGTTAA-
---TAGGTGTGAAG
 A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

TBR1/MA0802.1/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TCCACGGTGTTAA-
----AGGTGTGAAA
 A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

EOMES/MA0800.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TCCACGGTGTTAA---
---AAGGTGTGAAAAT
 A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

PB0109.1_Bbx_2/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCCACGGTGTTAA------
--NNNNCTGTTAACNNTNN
 A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

Rhox11/MA0629.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCCACGGTGTTAA----
AAGACGCTGTAAAGCGA
 A C G T A G T C A G T C C T G A G T A C A C T G C T A G A C G T A C T G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A