Information for 3-AAGCCACBCCTRGAGG (Motif 5)

C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
Reverse Opposite:
G T A C A T G C G C A T G T A C A G T C C G T A C T A G T A C G T C G A A T C G G C A T C A T G A C T G A G T C C G A T A C G T
p-value:1e-19
log p-value:-4.404e+01
Information Content per bp:1.649
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.01%
Number of Background Sequences with motif100.8
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets48.5 +/- 24.9bp
Average Position of motif in Background50.2 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAGCCACBCCTRGAGG
AAACCACANN------
 C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AAGCCACBCCTRGAGG
SSAATCCACANN------
 A C G T A C G T C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:3
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AAGCCACBCCTRGAGG
TCCAATCCACA--------
 A C G T A C G T A C G T C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AAGCCACBCCTRGAGG
AAACCACAGAN-----
 C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T

POL007.1_BREd/Jaspar

Match Rank:5
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AAGCCACBCCTRGAGG
NANANAC---------
 C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
T G C A T G C A T G A C T G C A G T C A T C G A G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AAGCCACBCCTRGAGG
NAAACCACAG-------
 A C G T C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:7
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AAGCCACBCCTRGAGG
-ATCCAC---------
 C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-AAGCCACBCCTRGAGG
NNGGCCACGCCTTTN--
 A C G T C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AAGCCACBCCTRGAGG
TAATCCCN---------
 A C G T C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:AAGCCACBCCTRGAGG
AAACCACAGC------
 C G T A C G T A C T A G A G T C G T A C C G T A T A G C A G C T A T G C G A T C G C A T C T A G C A T G C G T A A T C G A C T G
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T