Information for 15-CAGCCTTTSTTGM (Motif 12)

A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A
Reverse Opposite:
A C G T A T G C G T C A C G T A A T C G C G T A G T C A G C T A T C A G T C A G T A G C A C G T A C T G
p-value:1e-9
log p-value:-2.085e+01
Information Content per bp:1.778
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif17.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets45.9 +/- 24.3bp
Average Position of motif in Background57.0 +/- 37.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CAGCCTTTSTTGM
---CCTTTGTT--
 A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAGCCTTTSTTGM
---CCWTTGTY--
 A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTTTSTTGM---
NNNTCCTTTGTTCTNNN
 A C G T A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTTTSTTGM---
TNNTCCTTTGTTCTNNT
 A C G T A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAGCCTTTSTTGM
--NCCATTGTTC-
 A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CAGCCTTTSTTGM
-----ATTGTT--
 A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAGCCTTTSTTGM
---YCTTTGTTCC
 A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAGCCTTTSTTGM----
CNNNTATTGTTCNNNNN
 A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAGCCTTTSTTGM
---CCATTGTTNY
 A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A
A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAGCCTTTSTTGM
---CCTTTGTTTT
 A G T C C G T A A T C G A G T C A G T C C G A T A C G T C G A T A T G C A C G T A C G T T A C G G T C A
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T