Information for 12-TGCCTGGAAGCAGCCC (Motif 19)

C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C
Reverse Opposite:
C T A G A C T G A T C G A G T C A C G T A C T G A T G C G A C T C A G T A G T C G T A C C G T A C A T G C T A G T G A C G C T A
p-value:1e-9
log p-value:-2.141e+01
Information Content per bp:1.742
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.6 +/- 21.5bp
Average Position of motif in Background43.1 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TGCCTGGAAGCAGCCC--
--CTTGGCANNNTGCCAA
 C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C A C G T A C G T
A C G T A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TGCCTGGAAGCAGCCC--
----TGGCACCATGCCAA
 C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGCCTGGAAGCAGCCC-
---CTGGCAGNCTGCCA
 C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGCCTGGAAGCAGCCC
TTCCNGGAAG------
 C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C
G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:5
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TGCCTGGAAGCAGCCC
NNCTTCCNGGAAGN-----
 A C G T A C G T A C G T C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C
A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TGCCTGGAAGCAGCCC
GGTCTGGCAT------
 C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TGCCTGGAAGCAGCCC
-SCCTAGCAACAG---
 C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTGGAAGCAGCCC
TTTCCNGGAAAN-----
 A C G T C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C
A G C T A C G T A C G T G T A C G A T C G C A T C T A G C A T G G T C A C G T A T C G A A G T C A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCTGGAAGCAGCCC
NNTNNTGTCTGGNNTNG----
 A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGGAAGCAGCCC
CTGTCTGG---------
 A C G T C A G T A C T G A G T C G T A C A C G T A C T G A C T G G C T A C G T A A T C G G T A C C G T A T C A G A T G C A G T C A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T