Information for 1-GCTGTCCATGGTCCTG (Motif 2)

A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A C T A G A T C G C G T A A G T C A G T C T G C A G A C T A C T G A C T G C G T A A T G C C G T A C T A G G T A C
p-value:1e-21
log p-value:-4.885e+01
Information Content per bp:1.833
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.6 +/- 16.3bp
Average Position of motif in Background52.0 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---GCTGTCCATGGTCCTG--
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---GCTGTCCATGGTCCTG-
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCTGTCCATGGTCCTG
-CTGTTCCTGG-----
 A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCTGTCCATGGTCCTG
GCTGTCAA--------
 A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCTGTCCATGGTCCTG
-CTGACCTTTG-----
 A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GCTGTCCATGGTCCTG
GCTGACCTTGAACTN-
 A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GCTGTCCATGGTCCTG
BNTGDCCTTG------
 A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:GCTGTCCATGGTCCTG
CCTGTCAA--------
 A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.48
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGTCCATGGTCCTG
NNNCAGCTGTCAATATN----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.48
Offset:0
Orientation:forward strand
Alignment:GCTGTCCATGGTCCTG
GCTGTG----------
 A C T G A G T C A C G T A T C G A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T T A G C A G T C A C G T A C T G
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T