Information for 23-GAGATGTTAATAC (Motif 27)

A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T C G T A A C G T A C G T C G T A C G T A A G T C C G T A A C G T A G T C A C G T A G T C
p-value:1e-3
log p-value:-8.507e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.5 +/- 29.1bp
Average Position of motif in Background78.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GAGATGTTAATAC
-AGGTGTTAAT--
 A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAGATGTTAATAC-
--TATGCWAATBAV
 A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C A C G T
A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAGATGTTAATAC-
---ATATTAATTAA
 A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C A C G T
A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

PH0170.1_Tgif2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAGATGTTAATAC
AACTAGCTGTCAATAC
 A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PH0035.1_Gsc/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGATGTTAATAC-----
-AATCGTTAATCCCTTTA
 A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAGATGTTAATAC
AACGAGCTGTCAATAC
 A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

FOXB1/MA0845.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAGATGTTAATAC
--TATGTAAATAT
 A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C
A C G T A C G T G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGATGTTAATAC
AAGGTGTKAA---
 A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAGATGTTAATAC---
-AGATGCTRCTRCCHT
 A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C A C G T A C G T A C G T
A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAGATGTTAATAC
--TATGCAAAT--
 A C T G C G T A A C T G C G T A A C G T A C T G A C G T A C G T C G T A C G T A A C G T C G T A A G T C
A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T