Information for 16-AGGTCACGGCGCG (Motif 16)

C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G
Reverse Opposite:
A T G C A C T G A T G C T C A G A G T C A T G C A C T G A G C T C T A G T C G A A G T C A G T C A G C T
p-value:1e-10
log p-value:-2.364e+01
Information Content per bp:1.779
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif22.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets41.2 +/- 14.9bp
Average Position of motif in Background45.3 +/- 39.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AGGTCACGGCGCG
AAGGTCAC------
 A C G T C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGGTCACGGCGCG
TRAGGTCA-------
 A C G T A C G T C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGGTCACGGCGCG
AGGTCA-------
 C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGGTCACGGCGCG
AGRGGTCA-------
 A C G T A C G T C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGGTCACGGCGCG--
AGGTCACCCTGACCT
 C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AGGTCACGGCGCG
ATCAAGGTCA-------
 A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCACGGCGCG
TCAAGGTCAN------
 A C G T A C G T A C G T C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------AGGTCACGGCGCG
TCTCAAAGGTCACGAG---
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------AGGTCACGGCGCG
TCTCAAAGGTCACCTG---
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGTCACGGCGCG
AGGTCAAGGTCA-
 C T G A A C T G A C T G A G C T A G T C C T G A G T A C T A C G C T A G A G T C A T C G G T A C A T C G
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T