Information for 1-SCGCCRGCCAATCRGM (Motif 1)

T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A
Reverse Opposite:
A C G T A T G C A G C T A T C G C G T A C A G T C G A T A T C G A C T G G A T C A G T C T A C G T C A G A T G C A C T G A T G C
p-value:1e-94
log p-value:-2.184e+02
Information Content per bp:1.581
Number of Target Sequences with motif195.0
Percentage of Target Sequences with motif21.43%
Number of Background Sequences with motif1494.2
Percentage of Background Sequences with motif3.33%
Average Position of motif in Targets50.6 +/- 23.7bp
Average Position of motif in Background48.7 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.93
Offset:5
Orientation:forward strand
Alignment:SCGCCRGCCAATCRGM
-----AGCCAATCGG-
 T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A
A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.90
Offset:0
Orientation:forward strand
Alignment:SCGCCRGCCAATCRGM
AAATGGACCAATCAG-
 T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.86
Offset:2
Orientation:forward strand
Alignment:SCGCCRGCCAATCRGM
--ACTAGCCAATCA--
 T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:SCGCCRGCCAATCRGM-----
---TGGACCAATCAGCACTCT
 T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.73
Offset:7
Orientation:forward strand
Alignment:SCGCCRGCCAATCRGM
-------CCAATCAA-
 T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.72
Offset:5
Orientation:reverse strand
Alignment:SCGCCRGCCAATCRGM
-----TGCCAA-----
 T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:SCGCCRGCCAATCRGM---
---ACNNCTAATTAGNNNN
 T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

EN2/MA0642.1/Jaspar

Match Rank:8
Score:0.68
Offset:6
Orientation:forward strand
Alignment:SCGCCRGCCAATCRGM
------CCCAATTAGC
 T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.68
Offset:7
Orientation:forward strand
Alignment:SCGCCRGCCAATCRGM
-------CCAATTAA-
 T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.68
Offset:7
Orientation:forward strand
Alignment:SCGCCRGCCAATCRGM
-------CCAATTAG-
 T A C G T G A C T A C G A G T C A T G C T C A G C T A G G T A C A T G C C G T A G C T A A C G T T A G C T C G A T A C G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T