Information for 4-GCCAGGCCTTTGTGCC (Motif 6)

A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C C T G A A G T C C G T A C G T A C T G A A C T G C T A G A G T C A G T C A G C T C T A G A C T G T A G C
p-value:1e-10
log p-value:-2.387e+01
Information Content per bp:1.901
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.5 +/- 21.6bp
Average Position of motif in Background32.2 +/- 10.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCCTTTGTGCC
-CNAGGCCT-------
 A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C
A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.64
Offset:6
Orientation:forward strand
Alignment:GCCAGGCCTTTGTGCC
------YCTTTGTTCC
 A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCCAGGCCTTTGTGCC
-CTAGGCCT-------
 A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C
A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCCAGGCCTTTGTGCC
NNGGCCACGCCTTTN----
 A C G T A C G T A C G T A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCCAGGCCTTTGTGCC--
---TGGACTTTGNNCTCN
 A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GCCAGGCCTTTGTGCC
------CCWTTGTYYB
 A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GCCAGGCCTTTGTGCC
------CCTTTGTTTT
 A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GCCAGGCCTTTGTGCC
------CCTTTGTT--
 A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GCCAGGCCTTTGTGCC
------CCWTTGTY--
 A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCCAGGCCTTTGTGCC---
---TGGACTTTGNNCTNTG
 A T C G A G T C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T C G A T A C T G A G C T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G