Information for 1-SCARARTGTKGTA (Motif 2)

A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A
Reverse Opposite:
A G C T C G T A A G T C G T C A C G T A A G T C C G T A A G C T A C G T A G C T A C G T A C T G A T G C
p-value:1e-12
log p-value:-2.864e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif3.57%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.4 +/- 26.1bp
Average Position of motif in Background66.7 +/- 8.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:SCARARTGTKGTA--
---NNHTGTGGTTWN
 A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A A C G T A C G T
A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:SCARARTGTKGTA
ACAGGATGTGGT-
 A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A
T C G A T A G C G T C A A C T G C T A G C G T A C G A T A C T G A C G T A C T G A C T G A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:SCARARTGTKGTA-
----NATGTTGCAA
 A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--SCARARTGTKGTA
GAACADWATGTTCTT
 A C G T A C G T A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:SCARARTGTKGTA--
-----CTGTGGTTTN
 A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--SCARARTGTKGTA
GRACAGWMTGTYCTB
 A C G T A C G T A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

PB0122.1_Foxk1_2/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:SCARARTGTKGTA-----
---NNNTGTTGTTGTTNG
 A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:SCARARTGTKGTA-
----GCTGTGGTTT
 A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

PB0032.1_IRC900814_1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:SCARARTGTKGTA---
GNNATTTGTCGTAANN
 A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A A C G T A C G T A C G T
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------SCARARTGTKGTA
ARGAGGMCAAAATGW----
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A C T G A C G T A C T G A A C G T A C T G A C G T A C G T A C T G A C G T C T G A
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T A C G T A C G T A C G T A C G T