Information for 3-WDTGATATATTATATG (Motif 3)

C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
Reverse Opposite:
A G T C C G T A C G A T C G T A A C G T C T G A C G T A A C G T G T C A C A G T C G T A A G C T A G T C C G T A G C T A G C T A
p-value:1e-10
log p-value:-2.323e+01
Information Content per bp:1.663
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif210.6
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets49.3 +/- 18.7bp
Average Position of motif in Background50.9 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX7/MA0680.1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:WDTGATATATTATATG
--TAATCGATTA----
 C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
A C G T A C G T C G A T T G C A G T C A G A C T A G T C T C A G C G T A C G A T G A C T G C T A A C G T A C G T A C G T A C G T

PAX3/MA0780.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:WDTGATATATTATATG
--TAATCGATTA----
 C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
A C G T A C G T C G A T T C G A G T C A A G C T A G T C T C A G C T G A A C G T G A C T G C T A A C G T A C G T A C G T A C G T

CUX2/MA0755.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:WDTGATATATTATATG
--TTATCGATTA----
 C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
A C G T A C G T C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A A C G T A C G T A C G T A C G T

CUX1/MA0754.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:WDTGATATATTATATG
--NTATCGATTA----
 C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A A C G T A C G T A C G T A C G T

PH0038.1_Hlx/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-WDTGATATATTATATG
CCATAATTAATTACA--
 A C G T C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.62
Offset:8
Orientation:forward strand
Alignment:WDTGATATATTATATG
--------ATTAAA--
 C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:WDTGATATATTATATG
-GYCATCMATCAT---
 C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-WDTGATATATTATATG
NANTTATATATAANGN-
 A C G T C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:WDTGATATATTATATG
--TGATTGATGA----
 C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:WDTGATATATTATATG
--CCATCAATCAAA--
 C G A T C G A T C G A T C T A G C T G A C G A T G T C A C A G T C G T A C G A T G A C T C G T A C G A T C G T A C G A T C T A G
A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T