Information for 2-GNTTAGWGSGAGATAT (Motif 2)

A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T
Reverse Opposite:
C G T A C A G T C T G A A C G T A G T C G A C T G A T C A T C G G T A C C G T A A G T C A C G T G C T A C G T A G T A C G T A C
p-value:1e-10
log p-value:-2.441e+01
Information Content per bp:1.670
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif5.45%
Number of Background Sequences with motif23.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets47.2 +/- 26.0bp
Average Position of motif in Background62.7 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0126.1_Gata5_2/Jaspar

Match Rank:1
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GNTTAGWGSGAGATAT------
-----GACAGAGATATCAGTGT
 A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GNTTAGWGSGAGATAT
BTBRAGTGSN------
 A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GNTTAGWGSGAGATAT
-TTGAGTGSTT-----
 A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.48
Offset:3
Orientation:forward strand
Alignment:GNTTAGWGSGAGATAT
---AGGTGHCAGACA-
 A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T
A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:GNTTAGWGSGAGATAT
NTCAAGTGGN------
 A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.47
Offset:1
Orientation:forward strand
Alignment:GNTTAGWGSGAGATAT
-TTRAGTGSYK-----
 A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:GNTTAGWGSGAGATAT
-TTAAGTGGT------
 A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T
A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:GNTTAGWGSGAGATAT
CTYRAGTGSY------
 A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:GNTTAGWGSGAGATAT
-TTAAGTGGN------
 A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T
A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

GLIS1/MA0735.1/Jaspar

Match Rank:10
Score:0.46
Offset:0
Orientation:reverse strand
Alignment:GNTTAGWGSGAGATAT
GCTTCGTGGGGGGTCT
 A C T G A C T G G A C T C A G T C G T A C T A G C G A T A C T G A T G C C T A G C T G A A C T G G T C A A G C T G T C A A C G T
T A C G G T A C C G A T G C A T G T A C A C T G G A C T A C T G C T A G A T C G A T C G C A T G A T C G G C A T T G A C C A G T