Information for 12-AAMAAAAAAG (Motif 16)

G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G
Reverse Opposite:
A G T C A G C T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C A G T
p-value:1e-6
log p-value:-1.399e+01
Information Content per bp:1.713
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif4.89%
Number of Background Sequences with motif1019.8
Percentage of Background Sequences with motif2.14%
Average Position of motif in Targets49.9 +/- 29.3bp
Average Position of motif in Background50.1 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0182.1_Srf_2/Jaspar

Match Rank:1
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----AAMAAAAAAG---
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G A C G T A C G T A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:2
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AAMAAAAAAG-
TACTGGAAAAAAAA
 A C G T A C G T A C G T G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G A C G T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

PB0116.1_Elf3_2/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----AAMAAAAAAG---
GTTCAAAAAAAAAATTC
 A C G T A C G T A C G T A C G T G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G A C G T A C G T A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AAMAAAAAAG
AAAACAAAGG
 G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0093.1_Zfp105_1/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AAMAAAAAAG--
AACAAACAACAAGAG
 A C G T A C G T A C G T G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G A C G T A C G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

PB0186.1_Tcf3_2/Jaspar

Match Rank:6
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----AAMAAAAAAG
AGCCGAAAAAAAAAT
 A C G T A C G T A C G T A C G T A C G T G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

PB0148.1_Mtf1_2/Jaspar

Match Rank:7
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AAMAAAAAAG
AAATAAGAAAAAAC
 A C G T A C G T A C G T A C G T G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AAMAAAAAAG----
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AAMAAAAAAG
--RACAAWGG
 G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

PB0123.1_Foxl1_2/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AAMAAAAAAG-
ATATCAAAACAAAACA
 A C G T A C G T A C G T A C G T A C G T G T C A T G C A T G C A G T C A G C T A G T C A G T C A G T C A C T G A C T A G A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A