Information for 9-KSWCAYGGCTGGC (Motif 10)

A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C
Reverse Opposite:
A T C G A G T C A G T C C G T A A C T G A G T C A G T C C T G A A C G T A C T G C G A T A T C G T G A C
p-value:1e-10
log p-value:-2.376e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.7 +/- 24.5bp
Average Position of motif in Background70.0 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:KSWCAYGGCTGGC---
-GTCATGCHTGRCTGS
 A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C A C G T A C G T A C G T
A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:KSWCAYGGCTGGC----
NNTNNTGTCTGGNNTNG
 A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:KSWCAYGGCTGGC--
------GGTTGGCAT
 A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:KSWCAYGGCTGGC---
NGTCACGCTTGGCTGC
 A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:KSWCAYGGCTGGC
------NGCTN--
 A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:KSWCAYGGCTGGC-----
--NGTAGGTTGGCATNNN
 A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:KSWCAYGGCTGGC--
-----GGTCTGGCAT
 A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:KSWCAYGGCTGGC---
-------NTTGGCANN
 A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.58
Offset:8
Orientation:forward strand
Alignment:KSWCAYGGCTGGC-
--------TTGGCA
 A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:KSWCAYGGCTGGC
--NAACAGCTGG-
 A C T G A T G C C G T A A G T C G T C A A G C T A C T G A C T G A G T C A C G T A C T G A C T G A T G C
A C G T A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T