Information for 13-CGCCGACGTGCGC (Motif 23)

A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C
Reverse Opposite:
T A C G A G T C A C T G A G T C C G T A A G T C A C T G A C G T A G T C A C T G A C T G A G T C A T C G
p-value:1e-7
log p-value:-1.750e+01
Information Content per bp:1.931
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.6 +/- 28.7bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:1
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CGCCGACGTGCGC
----TACGTGCV-
 A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C
A C G T A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CGCCGACGTGCGC
---GGACGTGC--
 A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C
A C G T A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGCCGACGTGCGC
-GGGTACGTGC--
 A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C
A C G T C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CGCCGACGTGCGC
---RTACGTGC--
 A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C
A C G T A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CGCCGACGTGCGC--
---CAACGTCCGCGG
 A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C A C G T A C G T
A C G T A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGCCGACGTGCGC
--NCCACGTG---
 A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C
A C G T A C G T T C G A T A G C T G A C C T G A A G T C A C T G G A C T C A T G A C G T A C G T A C G T

PB0043.1_Max_1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGCCGACGTGCGC-
CCNNANCACGTGGTCN
 A C G T A C G T A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C A C G T
G T A C G T A C A G T C T A C G T G C A T A G C G T A C C T G A A G T C T C A G G A C T A C T G A T C G A C G T G T A C G T C A

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGCCGACGTGCGC
-NNCCACGTGG--
 A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C
A C G T T C A G T C A G T A G C A G T C C T G A A G T C C T A G A C G T A C T G A T C G A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGCCGACGTGCGC
--GCCACGTG---
 A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C
A C G T A C G T C T A G A T G C A G T C C G T A A G T C C T A G A C G T A C T G A C G T A C G T A C G T

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CGCCGACGTGCGC
---CCACGTGGNN
 A T G C A C T G G T A C A G T C C T A G C G T A A G T C A C T G A C G T A C T G A G T C A C T G A T G C
A C G T A C G T A C G T T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C